Should I continue the protocol when child has fever and cold?

In general, yes, but if a child’s fever is accompanied by nausea and vomiting, one might be forced to hold off on the protocol for a few days until the child can keep everything down. There is no contraindication between the use of rifaximin, inulin, fish oil, or olive oil and typical medicines one might use when treating a fever (acetaminophen or ibuprofen).